Http 500 issue: Exodus 1.0.0: Unexpected file length, Follow

Ali Celik

Created September 10, 2018 13:32

Hi,

We have been using Youtrack for a long time, without the need to upgrade it (so currently running v.4)

Unfortionatilly, we have an issue where we get below error output.

We have tried to delete the xd.lck file and retried again as it prints out;

jetbrains.exodus.exceptions.ExodusException: Exodus 1.0.0: Unexpected file length, address = 47454355456.

Thanks in advanced.

Error:

org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'transientEntityStore' defined in file [C:\Program Files (x86)\YouTrack\work\Catalina\localhost\_\WEB-INF\classes\jetbrains\charisma\persistent\storeConfigurationDatabase.xml]: Cannot resolve reference to bean 'persistentEntityStore' while setting bean property 'persistentStore'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'persistentEntityStore' defined in file [C:\Program Files (x86)\YouTrack\work\Catalina\localhost\_\WEB-INF\classes\jetbrains\charisma\persistent\storeConfigurationDatabase.xml]: Cannot resolve reference to bean 'persistentDataEnvironment' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'persistentDataEnvironment' defined in file [C:\Program Files (x86)\YouTrack\work\Catalina\localhost\_\WEB-INF\classes\jetbrains\charisma\persistent\exodusDataEnvironmentConfiguration.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [jetbrains.exodus.env.Environment]: Constructor threw exception; nested exception is jetbrains.exodus.exceptions.ExodusException: Exodus 1.0.0: Unexpected file length, address = 47454355456.
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:880)
webr.framework.controller.WebLocalClasspathXmlServiceLocator.getBean(WebLocalClasspathXmlServiceLocator.java:69)
jetbrains.springframework.configuration.runtime.ServiceLocator.getBean(ServiceLocator.java:54)
jetbrains.charisma.persistent.AddDNQSessionListenerServiceLocatorListener.onAfterInit(AddDNQSessionListenerServiceLocatorListener.java:15)
jetbrains.springframework.configuration.runtime.ServiceLocator.fireLocalAfterInit(ServiceLocator.java:112)
jetbrains.charisma.main.ServletImpl.init(ServletImpl.java:64)
javax.servlet.GenericServlet.init(GenericServlet.java:212)
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:558)
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
org.apache.coyote.http11.Http11NioProcessor.process(Http11NioProcessor.java:883)
org.apache.coyote.http11.Http11NioProtocol$Http11ConnectionHandler.process(Http11NioProtocol.java:721)
org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:2258)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
java.lang.Thread.run(Thread.java:745)

root cause
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'persistentEntityStore' defined in file [C:\Program Files (x86)\YouTrack\work\Catalina\localhost\_\WEB-INF\classes\jetbrains\charisma\persistent\storeConfigurationDatabase.xml]: Cannot resolve reference to bean 'persistentDataEnvironment' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'persistentDataEnvironment' defined in file [C:\Program Files (x86)\YouTrack\work\Catalina\localhost\_\WEB-INF\classes\jetbrains\charisma\persistent\exodusDataEnvironmentConfiguration.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [jetbrains.exodus.env.Environment]: Constructor threw exception; nested exception is jetbrains.exodus.exceptions.ExodusException: Exodus 1.0.0: Unexpected file length, address = 47454355456.
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:479)
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:880)
webr.framework.controller.WebLocalClasspathXmlServiceLocator.getBean(WebLocalClasspathXmlServiceLocator.java:69)
jetbrains.springframework.configuration.runtime.ServiceLocator.getBean(ServiceLocator.java:54)
jetbrains.charisma.persistent.AddDNQSessionListenerServiceLocatorListener.onAfterInit(AddDNQSessionListenerServiceLocatorListener.java:15)
jetbrains.springframework.configuration.runtime.ServiceLocator.fireLocalAfterInit(ServiceLocator.java:112)
jetbrains.charisma.main.ServletImpl.init(ServletImpl.java:64)
javax.servlet.GenericServlet.init(GenericServlet.java:212)
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:558)
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
org.apache.coyote.http11.Http11NioProcessor.process(Http11NioProcessor.java:883)
org.apache.coyote.http11.Http11NioProtocol$Http11ConnectionHandler.process(Http11NioProtocol.java:721)
org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:2258)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
java.lang.Thread.run(Thread.java:745)

root cause
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'persistentDataEnvironment' defined in file [C:\Program Files (x86)\YouTrack\work\Catalina\localhost\_\WEB-INF\classes\jetbrains\charisma\persistent\exodusDataEnvironmentConfiguration.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [jetbrains.exodus.env.Environment]: Constructor threw exception; nested exception is jetbrains.exodus.exceptions.ExodusException: Exodus 1.0.0: Unexpected file length, address = 47454355456.
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:254)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:479)
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:880)
webr.framework.controller.WebLocalClasspathXmlServiceLocator.getBean(WebLocalClasspathXmlServiceLocator.java:69)
jetbrains.springframework.configuration.runtime.ServiceLocator.getBean(ServiceLocator.java:54)
jetbrains.charisma.persistent.AddDNQSessionListenerServiceLocatorListener.onAfterInit(AddDNQSessionListenerServiceLocatorListener.java:15)
jetbrains.springframework.configuration.runtime.ServiceLocator.fireLocalAfterInit(ServiceLocator.java:112)
jetbrains.charisma.main.ServletImpl.init(ServletImpl.java:64)
javax.servlet.GenericServlet.init(GenericServlet.java:212)
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:558)
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
org.apache.coyote.http11.Http11NioProcessor.process(Http11NioProcessor.java:883)
org.apache.coyote.http11.Http11NioProtocol$Http11ConnectionHandler.process(Http11NioProtocol.java:721)
org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:2258)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
java.lang.Thread.run(Thread.java:745)

root cause
org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [jetbrains.exodus.env.Environment]: Constructor threw exception; nested exception is jetbrains.exodus.exceptions.ExodusException: Exodus 1.0.0: Unexpected file length, address = 47454355456.
org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:115)
org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:87)
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:248)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:479)
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:880)
webr.framework.controller.WebLocalClasspathXmlServiceLocator.getBean(WebLocalClasspathXmlServiceLocator.java:69)
jetbrains.springframework.configuration.runtime.ServiceLocator.getBean(ServiceLocator.java:54)
jetbrains.charisma.persistent.AddDNQSessionListenerServiceLocatorListener.onAfterInit(AddDNQSessionListenerServiceLocatorListener.java:15)
jetbrains.springframework.configuration.runtime.ServiceLocator.fireLocalAfterInit(ServiceLocator.java:112)
jetbrains.charisma.main.ServletImpl.init(ServletImpl.java:64)
javax.servlet.GenericServlet.init(GenericServlet.java:212)
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:558)
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
org.apache.coyote.http11.Http11NioProcessor.process(Http11NioProcessor.java:883)
org.apache.coyote.http11.Http11NioProtocol$Http11ConnectionHandler.process(Http11NioProtocol.java:721)
org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:2258)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
java.lang.Thread.run(Thread.java:745)

root cause
jetbrains.exodus.exceptions.ExodusException: Exodus 1.0.0: Unexpected file length, address = 47454355456.
jetbrains.exodus.log.Log.<init>(Log.java:89)
jetbrains.exodus.env.Environment.createLog(Environment.java:134)
jetbrains.exodus.env.Environment.createDefaultLog(Environment.java:112)
jetbrains.exodus.env.Environment.<init>(Environment.java:75)
sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
java.lang.reflect.Constructor.newInstance(Constructor.java:423)
org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100)
org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:87)
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:248)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:479)
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
java.security.AccessController.doPrivileged(Native Method)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
org.springframework.beans.factory.support.AbstractBeanFactory$2.getObject(AbstractBeanFactory.java:302)
webr.framework.controller.WebLocalScope.get(WebLocalScope.java:33)
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:880)
webr.framework.controller.WebLocalClasspathXmlServiceLocator.getBean(WebLocalClasspathXmlServiceLocator.java:69)
jetbrains.springframework.configuration.runtime.ServiceLocator.getBean(ServiceLocator.java:54)
jetbrains.charisma.persistent.AddDNQSessionListenerServiceLocatorListener.onAfterInit(AddDNQSessionListenerServiceLocatorListener.java:15)
jetbrains.springframework.configuration.runtime.ServiceLocator.fireLocalAfterInit(ServiceLocator.java:112)
jetbrains.charisma.main.ServletImpl.init(ServletImpl.java:64)
javax.servlet.GenericServlet.init(GenericServlet.java:212)
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:558)
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
org.apache.coyote.http11.Http11NioProcessor.process(Http11NioProcessor.java:883)
org.apache.coyote.http11.Http11NioProtocol$Http11ConnectionHandler.process(Http11NioProtocol.java:721)
org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:2258)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
java.lang.Thread.run(Thread.java:745)

3 comments

Liubov Melnikova

Created September 13, 2018 17:01

Official comment

Did this error message appear after you tried to delete the system YouTrack file? What was the reason to delete the file?

Ali Celik

Created September 17, 2018 08:32

Hi Luba,

The issue started few months ago, where we couldn't create incidents in youtrack and we had to restore the server (VM) we are running our youtrack on.

This helped for a 1-2 months and it started again with above error message.

After reading other issue threads with almost similar behavior;

- I tried to delete the xd.lck file and restart youtrack ->didn't helped.

- I read that the .xd files should be 8.192 MB and I could see that some of my exodus files where less, so I tried to delete the ones that wasn't. And here it didnt helped either.

Please let me know if you need log files to identify the issue.

Many thanks,

Ali

Liubov Melnikova

Created September 18, 2018 15:32

Generally we don't support version 4, as it is too dated. Also we don't support removal of xd files and any manipulations with database.

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