How to configure GitHub integration for organisations

I'm trying to setup the GitHub integration for our organisation.
Following all the steps of this manual: https://confluence.jetbrains.com/display/YTD6/GitHub+Integration I've setup the possibility to provide a direct link to a GitHub commit. But I wasn't lucky with applying a command from a comment to a GitHub commit.

I've enabled (in the YouTrack project settings) service hook, selected the organisation and the repo but still not working.
Is there anything I'm missing?
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Hi Martin,

Thank you for your patience.
Does committers group has Read issue and Update issue permissions in target YouTrack project?
Could you please clarify whether you'd like to apply command or wish to be able to provide direct links only https://confluence.jetbrains.com/display/YTD6/GitHub+Integration ?In case of commands, please execute steps starting from 7th.
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