Service won't start after changing configuration

After upgrading to youtrack 6, everything was working great, except previously YT was running on port 8085 not 8081, now it ran on 8081.

I followed the instructions on how to change the port, this led me to the configuration file which then said to run bin/youtrack configure –listen-port=8085

I ran this command, but after running the command the service no longer runs.

This is the log:

[2014-12-16 10:47:43,669] RollFileWriter     [Info] Logging will be redirected to: C:\ProgramData\JetBrains\YouTrack\logs\service.log
[2014-12-16 10:47:43,669] LOG [Info] Settings log level from the settings file: debug
[2014-12-16 10:47:43,669] ServiceAction     [Debug] ExecuteAction entered
[2014-12-16 10:47:43,669] ServiceAction     [Debug] Calling StartServiceCtrlDispatcher
[2014-12-16 10:47:43,673] ServiceAction     [Debug] Executing JetServiceMain
[2014-12-16 10:47:43,673] ServiceMain       [Debug] Executing JetServiceMain
[2014-12-16 10:47:43,673] ServiceMain       [Debug] RegisterServiceCtrlHandler completed
[2014-12-16 10:47:43,673] ServiceStatus     [Debug] Set status to: starting
[2014-12-16 10:47:43,673] ThreadedServiceTask[Info] CallStartService
[2014-12-16 10:47:43,673] ServiceStatus     [Debug] Set status to: starting
[2014-12-16 10:47:43,673] ThreadedServiceTask              [Debug] Started service task thread
[2014-12-16 10:47:43,673] ServiceStatus::Thread            [Debug] Call SetServiceStatus called for: starting
[2014-12-16 10:47:43,673] ThreadedServiceTask:Thread       [Debug] Thread started
[2014-12-16 10:47:43,673] FileServiceSettings              [Debug] Loading service settings from C:\ProgramData\JetBrains\YouTrack\conf\internal\launcher.service.settings.xml
[2014-12-16 10:47:43,674] FileServiceSettings              [Debug] Loaded settings:
<?xml version="1.0" encoding="utf-8"?>
<!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
<!-- DO NOT CHANGE THIS FILE! ALL YOUR CHANGES WILL BE ELIMINATED AFTER AUTOMATIC UPGRADE. -->
<!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
<jetservice>
  <name>youtrack</name>
  <displayName>YouTrack</displayName>
  <description>The Agile Issue Tracking and Project Tracking Tool</description>
  <service-logging file="C:\ProgramData\JetBrains\YouTrack\logs\service.log" level="debug"/>
  <execution>
    <workdir>..\..</workdir>
    <program>cmd.exe</program>
    <arguments>/c bin\youtrack.bat run from-service</arguments>
    <status-marker>
      <started>###-STARTED-f0SJK3P4wGKm6dOdWlouxGHLBO5Pogsbq27V7h9M-###</started>
    </status-marker>
    <termination timeout="6">
      <execution> 
        <workdir>..\..</workdir>
        <program>cmd.exe</program>
        <arguments>/c bin\youtrack.bat stop</arguments>
      </execution>
    </termination>
  </execution>
</jetservice>
[2014-12-16 10:47:43,674] FileTaskSettings   [Info] Parsing service settings
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Relative paths are resolved with base path: C:\ProgramData\JetBrains\YouTrack\conf\internal\launcher.service.settings.xml
[2014-12-16 10:47:43,674] File              [Debug] Resolved base path: C:\ProgramData\JetBrains\YouTrack\conf\internal
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Program work dir from settings:   ..\..
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Resolved workdir path: C:\ProgramData\JetBrains\YouTrack
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Program to execute from settings: cmd.exe
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Resolved path to program: C:\Windows\system32\cmd.exe
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Program arguments from settings:  /c bin\youtrack.bat run from-service
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Program stop timeout from settings: 6
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Parsing timeout: 6
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Parsed value: 6.000000
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Program to execute from settings: cmd.exe
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Resolved path to program: C:\Windows\system32\cmd.exe
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Program work dir from settings:   ..\..
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Resolved workdir path: C:\ProgramData\JetBrains\YouTrack
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Program arguments from settings:  /c bin\youtrack.bat stop
[2014-12-16 10:47:43,674] FileTaskSettings  [Debug] Service started marker: ###-STARTED-f0SJK3P4wGKm6dOdWlouxGHLBO5Pogsbq27V7h9M-###
[2014-12-16 10:47:43,674] FileTaskSettings   [Info] Program to execute:   C:\Windows\system32\cmd.exe
[2014-12-16 10:47:43,674] FileTaskSettings   [Info] Program arguments:    /c bin\youtrack.bat run from-service
[2014-12-16 10:47:43,674] FileTaskSettings   [Info] Program work dir:     C:\ProgramData\JetBrains\YouTrack
[2014-12-16 10:47:43,674] FileTaskSettings   [Info] Program stop timeout: 360000
[2014-12-16 10:47:43,674] ServiceProcessCommand            [Debug] starting process
[2014-12-16 10:47:43,674] ServiceProcessCommand            [Debug] stop wait timeout: 360000
[2014-12-16 10:47:43,674] ServiceProcessCommand            [Debug] Will call stop command. Termination wait timeout is 360000 milliseconds.
[2014-12-16 10:47:43,674] ProcessCommand    [Debug] Starting process
[2014-12-16 10:47:43,674] ProcessCommand    [Debug] Starting process: "C:\Windows\system32\cmd.exe" /c bin\youtrack.bat run from-service (in C:\ProgramData\JetBrains\YouTrack)
[2014-12-16 10:47:43,674] ProcessCommand    [Debug] Starting process
[2014-12-16 10:47:43,721] ProcessCommand     [Info] Process exited with code: 1
[2014-12-16 10:47:43,802] console            [Info] The system cannot find the path specified.
[2014-12-16 10:47:43,802] PipeReader        [Debug] PipeReader::~PipeReader => inheritor object is disposed!
[2014-12-16 10:47:43,802] ServiceExecuteProcessTask        [Error] Service process exited without service stop request
[2014-12-16 10:47:43,802] ThreadedServiceTask:Thread       [Debug] Task finished. Interrupted=false.
[2014-12-16 10:47:43,803] ServiceStatus     [Debug] Set status to: stopped
[2014-12-16 10:47:43,803] ServiceStatus::Thread            [Debug] Call SetServiceStatus called for: stopped
[2014-12-16 10:47:43,803] ServiceStatus::Thread            [Debug] Recieved final event. Thread exiting
[2014-12-16 10:47:43,805] ServiceAction     [Debug] Exit ExecuteAction
[2014-12-16 10:47:43,805] JetServiceRunner  [Debug] Exited with code 0